Selected Recent Journal Publications (out of over 100 journal publications):

    2011

  1. 2.Junbo Zhang, Dong Xiang, Tianrui Li, and Yi Pan, ``M2M: A simple Matlab-to-MapReduce translator for Cloud Computing, Tsinghua Science and Technology, January 2013. PDF file here
  2. J. Wang, M. Li, J. Chen, and Y. Pan, ``A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks'' {\em IEEE Transactions on Computational Biology and Bioinformatics}, to appear.
  3. Y. Dai, Y. Xiang, and Y. Pan, ``Bionic Autonomic Nervous Systems for Self-Defense against DoS, Spyware, Malware, Virus and Fishing,'' Special Issue on Adaptive Security Systems for {\em ACM Transactions on Autonomous and Adaptive Systems}, to appear.

    2010

  4. Jinxin Wang, Binbin Liu, Min Li, and Yi Pan, ``Identifying protein complexes from interaction networks based on clique percolation and distance restriction,'' {\em BMC Genomics}, Volume 11, Suppl 2, S10, Nov. 2010.
  5. Jianxin Wang, Min Li, Youping Deng and Yi Pan, ``Recent Advances in Clustering Methods for Protein Interaction Networks,'' {\em BMC Genomics}, Volume 11, Suppl 3, S10, 2010.
  6. N. Xiong, X. Jia, L. Yang, A. Vasilakos, Y. Li, and Yi Pan, ``A Distributed Efficient Flow Control Scheme for Multi-rate Multicast Networks'' {\em IEEE Transactions on Parallel and Distributed Systems}, Vol. 21, No. 9, pp. 1254-1266, Sept. 2010.
  7. Y. Li, C. Ai, C. T. Vu, Y. Pan, and R. Beyah, ``Delay Bounded and Energy Efficient Composite Event Monitoring in Heterogeneous Wireless Sensor Networks,'' {\em IEEE Transactions on Parallel and Distributed Systems}, Vol. 21, No. 9, pp. 1373-1385, Sept. 2010.
  8. N. Xiong, A. Vasilakos, L. Yang, Y. Pan, C. Wang, A. Vandenberg, ``Distributed Explicit Rate Schemes in Multi-Input-Multi-Output Network Systems'', {\em IEEE Trans. on Systems, Man, and Cybernetics}, Part-C, Vol. 40, No. 4, pp. 448-459, July 2010.
  9. N. Xiong, A. Vasilakos, L. Yang, C. Wang, R. Kannan, C. Chang, and Y. Pan, ``A novel self-tuning feedback controller for active queue management supporting TCP flows,'' {\em Information Sciences}, Vol. 180, No. 11, pp. 2249-2263, June 2010.
  10. X. Wang, P. Fan, and Y. Pan, ``Impact of Busy-Line Effect upon Interservice Time Distribution and Modeling of Portable Movements in PCS Networks,'' {\em IEEE Transactions on Vehicular Technology,} Vol. 59, No. 2, pp. 950-961, Feb. 2010.
  11. B. Chen, J. He, S. Pellicer, and Y. Pan, ``Using Hybrid Hierarchical K-means (HHK) clustering algorithm for protein sequence motif Super-Rule-Tree (SRT) structure construction,'' {\em International Journal of Data Mining and Bioinformatics}, Vol. 4, No. 3, pp. 316-330, 2010.

    2009

  12. Bernard Chen, Stephen Pellicer, Phang C. Tai, Robert Harrison, Yi Pan, ``Novel efficient granular computing models for protein sequence motifs and structure information discovery,'' I. J. Computational Biology and Drug Design, Vol. 2 No. 2, pp. 168-186 (2009).
  13. Jieyue He, Fang Zhou, Wei Zhong, Yi Pan, ``Gene subsets extraction based on Mutual-Information-based Minimum Spanning Trees model,'' I. J. Computational Biology and Drug Design, Vol. 2, No. 2, pp. 187-203 (2009).
  14. Peter Loh, Say Huan Long, and Yi Pan, ``Performance Evaluation of Efficient and Reliable Routing Protocols for Fixed-Power Sensor Networks,'' {\em IEEE Transactions on Wireless Communications,} Vol. 8, No. 5, pp. 2328-2335, 2009.
  15. Y.Q. Zhang, and Yi Pan, ``Incomplete Crossed Hypercubes,'' {\em The Journal of Supercomputing}, Vol. 49, pp. 318-333, 2009.
  16. N. Xiong, Y. Pan, X. Jia, J. Park, and Y. Li, ``Design and analysis of a self-tuning feedback controller for the Internet,'' {\em Computer Networks,} Vol. 53, No. 11, pp. 1784-1797, 2009.
  17. I. H. Kuo, S. J. Horng, T. W. Kao, T. L. Lin, C. L. Lee, T Terano and Y. Pan, ``An efficient flow-shop scheduling algorithm based on a hybrid particle swarm optimization model,'' {\em Expert Systems with Applications}, Vol. 36, No. 3, pp. 7027-7032, 2009.
  18. I. H. Kuo, S. J. Horng, T. W. Kao, T. L. Lin, C. L. Lee and Y. Pan, ``An improved method for forecasting enrollments based on fuzzy time series and particle swarm optimization,'' {\em Expert Systems with Applications}, Vol. 36, No. 3, pp. 6108-6117, 2009.
  19. Wei-Hung Lin, Yuh-Rau Wang, Shi-Jinn Horng, Tzong-Wann Kao, Yi Pan, ``A blind watermarking method using maximum wavelet coefficient quantization,'' {\em Expert Systems with Applications}, Vol. 36, No. 9, pp. 11509-11516, 2009.
  20. N. Xiong, A. V. Vasilakos, L. Yang, L. Song, Y. Pan, R. Kannan, and Y. Li, "Comparative Analysis of Quality of Service and Memory Usage for Adaptive Failure Detectors in Healthcare Systems," IEEE Journal on Selected Areas in Communications on Wireless and Pervasive Communications for Healthcare, Vol. 27, No. 4, pp.1-15, May 2009.
  21. D. Xiang, Y. Zhang, and Y. Pan, ``Practical deadlock-free fault-tolerant routing in meshes based on the planar network fault model,'' IEEE Trans. on Computers, Vol. 58, No. 5, May 2009, pp. 620-633. PDF file here
  22. Deng Li, Zhi-Gang Chen, Hui Liu, A. V. Vasilakos and Yi Pan, ``IPBGA: a hybrid P2P based grid architecture by using information pool protocol,'' The Journal of Supercomputing, Vol. 49, No. 2, pp. 159-189, Aug. 2009.
  23. R. Ghazizadeh, P. Fan, and Y. Pan, "A Priority Queuing Model for HCF Controlled Channel Access (HCCA) in Wireless LANs," I. J. Communications, Network and System Sciences, 2009, Vol. 1, pp. 1-89.

    2008

  24. Bernard Chen, Stephen Pellicer, Phang C. Tai, Robert Harrison and Yi Pan, ``Efficient Super Granular SVM Feature Elimination (Super GSVM-FE) Model for Protein Sequence Motif Information Extraction'', International Journal of Functional Informatics and Personalised Medicine, Vol. 1, No. 1, 2008, pp. 8-25.
  25. I. H. Kuo, S. J. Horng, T. W. Kao, T. L. Lin, C. L. Lee, T Terano and Y. Pan, ``An efficient flow-shop scheduling algorithm based on a hybrid particle swarm optimization model,'' Expert Systems with Applications , Vol. 44, No. 2, 2008.
  26. I. H. Kuo, S. J. Horng, T. W. Kao, T. L. Lin, C. L. Lee and Y. Pan, ``An improved method for forecasting enrollments based on fuzzy time series and particle swarm optimization,'' Expert Systems with Applications , Vol. 43, No. 3, 2008.
  27. S. J. Horng, P. Fan, Y. P. Chou, Y. C. Chang and Y. Pan, ``A Feasible Intrusion Detector for Recognizing IIS attacks based on Neural Networks,'' Computers & Security , Vol. 27, No. 3-4, pp. 84-100, 2008.
  28. Xian Wang, Pingzhi Fan, Jie Li, and Yi Pan, ``Modeling and Cost Analysis of Movement-Based Location Management for PCS Networks with HLR/VLR Architecture and General Location Area and Cell Residence Time Distributions,'' IEEE Trans. on Vehicular Technology, Vol. 57, No. 6, pp. 3815-3831, November 2008. PDF file here
  29. Wei-Hung Lin, Shi-Jinn Horng, Tzong-Wann Kao, Pingzhi Fan, Cheng-Ling Lee, and Yi Pan, "Efficient Watermarking Method Based on Significant Difference of Wavelet Coefficient Quantization," IEEE Transactions on Multimedia, Vol. 10, No. 5, August 2008, pp. 746-757.
  30. Stephen Pellicer, Guihai Chen, Keith C.C. Chan, and Yi Pan, "Distributed Sequence Alignment Applications for the Public Computing Architecture," IEEE Transactions on NanoBioscience, Vol. 7, No. 1, March 2008, pp. 35-43. PDF file here
  31. X. Wang, P. Fan and Y. Pan, "A More Realistic Thinning Scheme for Call Admission Control in Multimedia Wireless Networks" IEEE Transactions on Computers, Vol. 57, No. 8, August 2008, pp. 1143-1148. PDF file here
  32. L. Tan, L. Jin, and Y. Pan, "Efficient Placement of Proxies for Hierarchical Reliable Multicast," Computer Communications, Vol. 31, No. 9, pp. 1842-1855, 2008. PDF file here
  33. Yong Li, Xiujuan Chen, Saeid Belkasim, and Yi Pan, ``High Performance Bi-Image Database Retrieval Using MPI,'' International Journal of Bioinformatics Research and Applications, Vol. 4, No. 1, 2008, pp. 49-63. PDF file here
  34. Chao Xie, Guihai Chen, Art Vandenberg, and Yi Pan, "Analysis of Hybrid P2P Overlay Network Topology," Computer Communications , Vol. 31, No. 2, 2008, pp. 190-200. PDF file here

    2007

  35. Muhammad Qadeer Sharif, Pingzhi Fan, and Pan Yi, ``On Average Waiting Time in Shared Dynamic Spectrum Allocation,'' Journal of Applied Sciences, vol. 7 no. 19, pp. 2891-2895, Sept. 2007.
  36. P. Loh, W.J. Hsu, and Yi Pan, ``Reliable and Efficient Communications in Sensor Networks,'' Journal of Parallel and Distributed Computing, Vol. 67, No. 8, pp. 922-934, 2007. PDF file here
  37. W. Zhong, G. Altun, X. Tian, R. Harrison1, P. C. Tai, and Yi Pan, "Parallel Protein Secondary Structure Prediction Schemes using Pthread and OpenMP over Hyper-Threading Technology," The Journal of Supercomputing, Vol. 41, No. 1, July 2007, pp. 1-16. PDF file here
  38. Hae-Jin Hu, Jeanetta Holley, Jieyue He, Robert W. Harrison, Hsiuchin Yang, Phang C. Tai and Yi Pan, "To Be or Not to Be: Predicting Soluble SecAs as Membrane Proteins," IEEE Transactions on NanoBioscience, Vol. 6, No. 2, June 2007, pp. 168-179. PDF file here
  39. A. K. Katangur, S. Akkaladevi, and Yi Pan, ``Analyzing the Performance of Optical Multistage Interconnection Networks with Limited Crosstalk,'' The Journal of Cluster Computing, Vol. 10, No. 2, June 2007, pp. 241-250. PDF file here
  40. A. Du, X. Hu and Y. Pan, "Prediction of the disulfide bridges in proteins using SVM," International Journal of Bioinformatics Research and Applications, Vol. 3, No. 2, 2007, pp. 223 - 233.
  41. Y. Dai, Y. Pan, and X.K. Zou, "A Hierarchical Modeling and Analysis for Grid Service Reliability," IEEE Transactions on Computers, May 2007, Vol. 56, No. 5, pp. 681-691. PDF file here
  42. J. Fan, X. Lin, Yi Pan, and X. Jia, "Optimal Fault-Tolerant Embedding of Paths in Twisted Cubes," Journal of Parallel and Distributed Computing (JPDC), Vol. 67, No. 2, Feb. 2007, pp. 205-214. PDF file here
  43. J. Xia, P. Fan, M. Q. Sharif, and Yi Pan, "Shared Dynamic Spectrum Allocation For Multiple Radio Systems," Chinese Journal of Electronics, Vol. 16, No. 2, April 2007, pp. 305-310.
  44. W. Zhong, J. He, R. Harrison, P.C. Tai, and Y. Pan, "Clustering Support Vector Machines for Protein Local Structure Prediction," Expert Systems With Applications, Vol. 32, No. 2, February 2007, pp. 518-526. PDF file here

    2006

  45. Yang Xiao, Chaitanya Bandela, Xiaojiang Du, Yi Pan, and Edilbert Kamal Dass, ``Security mechanisms, attacks and security enhancements for the IEEE 802.11 WLANs,'' International Journal of Wireless and Mobile Computing, Vol. 1, No. 3/4, pp. 276-288, 2006. PDF file here
  46. L. Qin, Y. Chen, Y. Pan, and L. Chen, ``A Novel Approach to Phylogenetic Tree Construction using Stochastic Optimization and Clustering,'' BMC Bioinformatics, Vol. 7(Suppl 4):S24, Dec. 2006. PDF file here
  47. Ling Qin, Yi Pan, Ling Chen, and Yixin Chen, ``An improved ant colony algorithm with diversified solutions based on the immune strategy,'' BMC Bioinformatics , Vol. 7(Suppl 4):S3, Dec. 2006. PDF file here
  48. X. Jin, Y. Zhang, Y. Pan, and Y. Zhou, "ZSBT: A Novel Algorithm for Tracing DOS Attackers in MANETS," EURASIP Journal on Wireless Communications and Networking, Vol. 2006, Article ID 96157, pp. 1-9, 2006. PDF file here
  49. H. Tian, A. Katangur, J. Zhong, and Y. Pan, ``A Novel Multistage Network Architecture with Multicast and Broadcast Capability,'' The Journal of Supercomputing , Vol. 35, No. 3, March 2006, pp. 277 - 300. PDF file here
  50. J. He, H. Hu, R. Harrison, P.C. Tai, and Yi Pan, ``Rule Generation for Protein Secondary Structure Prediction with Support Vector Machines and Decision Tree,'' IEEE Transactions on NanoBioscience, Vol. 5, No. 1, March 2006, pp. 46-53. PDF file here
  51. J. He, H. Hu, R. Harrison, P.C. Tai, and Yi Pan, "Transmembrane Segments Prediction and Understanding using Support Vector Machine and Decision Tree," Expert Systems with Applications, Special Issue on Intelligent Bioinformatics Systems, Vol. 30, No. 1, January 2006, pp. 64-72. PDF file here
  52. X. Fu and A. G. Bourgeois, P. Fan, and Yi Pan, ``Using a genetic algorithm approach to solve the dynamic channel-assignment problem'', International Journal of Mobile Communications, Vol. 4, No. 3, 2006, pp. 333-353. PDF file here

    2005

  53. Yang Xiao, Kin K. Leung, Yi Pan, Xiaojiang Du, ``Architecture, mobility management, and quality of service for integrated 3G and WLAN networks,'' Wireless Communications and Mobile Computing, Vol. 5, No. 7, Nov. 2005, pp. 805-823.
  54. V. Kolli, H. Liu, J. He, M. Pan, and Yi Pan, "Calculating Genomic Distances in Parallel Using OpenMP," Transactions on Computational Systems Biology 2, pp. 113-123, 2005.
  55. Wei Zhong, Gulsah Altun, Robert Harrison, Phang C. Tai, and Yi Pan, "Improved K-means Clustering Algorithm for Exploring Local Protein Sequence Motifs Representing Common Structural Property," IEEE Transactions on NanoBioscience, Vol. 4, No. 3, Sept. 2005, pp. 255-265. PDF file here
  56. Ajay K Katangur, Somasheker Akkaladevi, Yi Pan, Martin D. Fraser, ``Routing in Optical Multistage Networks with Limited Crosstalk using Ant Colony Optimization,'' International Journal of Foundations of Computer Science, Vol. 16, No. 2, pp. 301-320, 2005.
  57. P. Loh, W. Hsu and Y. Pan, "The Exchanged Hypercube," IEEE Transactions on Parallel and Distributed Systems, Vol. 16, No. 9, pp. 866-874, September 2005. PDF file here
  58. M. Guo and Y. Pan, "Improving Communication Scheduling for Array Redistribution," Journal of Parallel and Distributed Computing (JPDC), Vol. 65, pp. 553-563, 2005. PDF file here
  59. Y. Xiao and Y. Pan, ``Differentiation, QoS guarantee, and Optimization for Real-time Traffic over One-hop Ad Hoc Networks,'' IEEE Transactions on Parallel and Distributed Systems, Vol. 16, No. 6, pp. 538-549, June 2005. PDF file here
  60. C. Ni, H. Liu, A. G. Bourgeois, and Y. Pan, ``An Enhanced Approach to Determine Connected Dominating Sets for Routing in Mobile Ad Hoc Networks,'' International Journal of Mobile Communications, Vol. 3, No. 3, 2005, pp. 287-302. PDF file here
  61. A. G. Bourgeois, Y. Pan, and S. K. Prasad, ``Constant Time Fault Tolerant Algorithms for a Linear Array with a Reconfigurable Pipelined Bus System,'' Journal of Parallel and Distributed Computing (JPDC), Vol. 65, No. 3, March 2005, pp. 374-381. PDF file here
  62. J. Li, Yi Pan, and Y. Xiao, "Performance Study of Multiple Route Dynamic Source Routing Protocols for Mobile Ad Hoc Networks," Special Issue of Journal of Parallel and Distributed Computing (JPDC) on Theoretical and Algorithmic Aspects of Sensor, Ad Hoc Wireless, and Peer-to-Peer Networks, Vol. 65, pp. 169-177, 2005. PDF file here
  63. Y. Xiao, H. Li, C. L. P. Chen, B. Wang, and Y. Pan, "Proportional Degradation Services in Wireless/Mobile Adaptive Multimedia Networks," Wireless Communications and Mobile Computing, Vol. 5, pp. 219-243, 2005. PDF file here

    2004

  64. H. Hu, Yi Pan, R. Harrison, and P. C. Tai, "Improved Protein Secondary Structure Prediction Using Support Vector Machine with a New Encoding Scheme and an Advanced Tertiary Classifier" IEEE Transactions on NanoBioscience, Vol. 3, No. 4, Dec. 2004, pp. 265- 271. PDF file here
  65. L. Chen, Y. Pan, and X. Xu, "Scalable and Efficient Parallel Algorithms for Euclidean Distance Transform on the LARPBS Model," IEEE Transactions on Parallel and Distributed Systems, Vol. 15, No. 11, Nov. 2004, pp. 975-982. PDF file here
  66. Y. Xiao, H. Li, Y. Pan, K. Wu, and J. Li, "On Optimizing Energy Consumption for Mobile Handsets," IEEE Transactions on Vehicular Technology, Vol. 53, No. 6, Nov. 2004. PDF file here
  67. L. Chen, Y. Pan, Y. Chen, and X. Xu, ``An Efficient Parallel Algorithm for Euclidean Distance Transform,'' The Computer Journal , Vol. 47, No. 6, 2004, pp. 694-700. PDF file here
  68. Y. Xiao, Y. Pan, and J. Li, "Design and Analysis of Location Management for 3G Cellular Networks" IEEE Transactions on Parallel and Distributed Systems, Vol. 15, No. 4, pp. 339-349, April 2004. PDF file here
  69. L. Chen and H. Chen, Y. Pan, and Y. Chen, "A Fast Efficient Parallel Hough Transform Algorithm on LARPBS," The Journal of Supercomputing, Vol. 29, pp. 185-195, 2004. PDF file here
  70. Yi Pan, Constantinos S. Ierotheou, Majeed M. Hayat, "Parallel Gain-Bandwidth Characteristics Calculations for Thin Avalanche Photodiodes on an SGI Origin 2000 Supercomputer," Concurrency and Computation: Practices an Experience, Vol. 16, pp. 1207-1225, July 2004. PDF file here
  71. Ajay K Katangur, Yi Pan, Martin D. Fraser, ''Simulated Annealing Routing and Wavelength Lower Bound Estimation on WDM Optical Multistage Networks,'' Special Issue on Advances in Optical Components and Subsystems for WDM Communications of Journal of Optical Engineering , Vol. 43, No. 5, pp. 1080-1091, May 2004. PDF file here
  72. Y. Luo, Y. Pan, J. Li, Y. Xiao, and X. Lin, "A simulation study of overflow replacement policies for location management in mobile networks," International Journal of Mobile Communications, Vol. 2, No.2 pp. 103-127, 2004.

    2003

  73. M. Guo, Yi Pan, and Z. Liu, "Symbolic Communication Set Generation for Irregular Parallel Applications," The Journal of Supercomputing, Vol. 25, July 2003, pp. 199-214. PDF file here
  74. O-H. Kwon, M. M. Hayat, S. Wang, J. C. Campbell, A. L. Holmes, Yi Pan, B. E. A. Saleh, and M. C. Teich, "Optimal Excess Noise Reduction in Thin Heterojunction Al0.6Ga0.4As/GaAs Avalanche Photodiodse," IEEE Journal of Quantum Electronics, Vol. 39, No. 10, October 2003, pp. 1287-1296. PDF file here
  75. Yi Pan, J. Shang, and M. Guo, "A Scalable HPF Implementation of Finite Volume Computational Electromagnetics Application on a Cray T3E Parallel System," Concurrency and Computation: Practices an Experience, Vol. 15, No. 6, 2003. pp. 607-621, May 2003. PDF file here
  76. J. Li, Y. Pan, and H. Shen, "More Efficient Topological Sort Using Reconfigurable Optical Buses," The Journal of Supercomputing, Vol. 24, No. 3, pp. 251-258, March 2003. PDF file here
  77. H. Shen, Y. Han, Y. Pan, and D. J. Evans, "Optimal Parallel Algorithms for Multiselection on Mesh-connected Computers," International Journal of Computer Mathematics, Vol. 80, No. 2, 2003, pp. 165-179.
  78. M. Guo, W-L. Chang, and Yi Pan, ``Optimization Techniques for Parallel Codes of Irregular Scienfitic Computations,'' IPSJ Transactions on High Performance Computing Systems, Vol. 44, No. SIG1, pp. 58-69, Jan., 2003. PDF file here
  79. W. Shan, P. Fan, and Yi Pan, ``Performance Evaluation of a Hierarchical Cellular System with Mobile Velocity-based Bidirectional Call-overflow Scheme,'' IEEE Transactions on Parallel and Distributed Systems, Vol. 14, No. 1, January 2003, pp. 72-83. PDF file here
  80. H. Shen, Yi Pan, J. Sum, and S. Horiguchi, "Multicasting in Multihop Optical WDM Networks with Limited Wavelength Conversion," (invited survey paper), IEICE Transactions on Information and Systems, Vol. E86-D, No.1 pp.3-14, January 2003. PDF file here

    2002

  81. S.-J. Horng, H.-R. Tsai, Y. Pan, and J. Seitzer, ``Optimal Algorithms for the Channel-Assignment Problem on a Reconfigurable Array of Processors with Wider Bus Networks,'' IEEE Transactions on Parallel and Distributed Systems, Vol. 13, No. 11, November 2002, pp. 1124-1138. PDF file here
  82. J. Li, Y. Pan, and X. Jia, "Analysis of Dynamic Location Management for PCS Networks," IEEE Transactions on Vehicular Technology, Vol. 51, No. 5, September 2002, pp. 1109-1119. PDF file here
  83. Y. Pan, Y. Li, J. Li, K. Li, and S.Q. Zheng, "Efficient Parallel Algorithms for Distance Maps of 2D Binary Images Using an Optical Bus," IEEE Transactions on Systems, Man, and Cybernetics - Part A: Systems and Humans , Vol. 32, No. 2, March 2002, pp. 228-236. PDF file here
  84. Y. Han, Y. Pan and H. Shen, "Sublogarithmic Deterministic Selection on Arrays with a Reconfigurable Optical Bus," IEEE Transactions on Computers, Vol. 51, No. 6, pp. 702-707, June 2002. PDF file here
  85. M. M. Hayat, O-H. Kwon, Y. Pan, P. Sotirelis, J. C. Campbell, B. E. A. Saleh, and M. C. Teich, ``Gain-bandwidth characteristics of thin avalanche photodiodes,'' IEEE Transactions on Electron Devices, Vol. 49, No. 5, May 2002, pp. 770-781. PDF file here
  86. S.-E. Jeon, R. T. Abler, J. A. Copeland, and Y. Pan, "Path Selection with Class Distribution Information in the Integrated Network," IEEE Communications Letters, Vol. 6, No. 2 , Feb. 2002, pp. 88 -90. PDF file here
  87. Y. Sun, X. Lin, Y. Pan, R.W.H. Lau, D. A. Bader and P. Cheung, "Generalized Block Shift Network for Clusters," IEEE Transactions on Circuits and Systems I: Fundamental Theory and Applications, Vol. 44, No. 2, pp. 543-546, 2002. PDF file here
  88. S.Q. Zheng, K. Li, Y. Pan, H. Shen and G.H. Young, "On Equal Chromstic Partition of Interconnection Networks," Journal of Combinatorial Mathematics and Combinatorial Computing, Vol. 40, February 2002, 227-239.

    2001

  89. X. Shen, F. Yang, Y. Pan "Equivalent Permultation Capabilities between Time Division Optical Omega Networks and Non-optical Extra-Stage Omega Networks," IEEE/ACM Transactions on Networking , Vol. 9, No. 4, August 2001, pp. 518 -524. PDF file here
  90. Y. Pan, S.Q. Zheng, K. Li and H. Shen, "An Improved Generalization of Mesh-Connected Computers with Multiple Buses," IEEE Transactions on Parallel and Distributed Systems, vol. 12, no. 3, pp. 293-305, March 2001. PDF file here
  91. S.Q. Zheng, K. Li, Y. Pan, and M. C. Pinotti, ``Generalized coincident pulse technique and new addressing schemes for time-division multiplexing optical buses,'' Journal of Parallel and Distributed Computing, Vol. 61, No. 8, pp. 1033-1051, August 2001. PDF file here
  92. Y. Pan, ``Fault tolerance in the block shift network,'' IEEE Transactions on Reliability, Vol. 50, No. 1, March 2001, pp. 85-91. PDF file here

    2000

  93. J. Seitzer, J. Buckley, and Y. Pan, "INDED: A distributed knowledge-based learning system," IEEE Intelligent Systems, Vol. 15, No. 5, pp. 38-46, September/October 2000. PDF file here
  94. K. Li and Y. Pan, "Probabilistic Analysis of Scheduling Precedence Constrained Parallel Tasks on Multicomputers with Contiguous Processor Allocation," IEEE Transactions on Computers, Vol. 49, No. 10, pp. 1013-1020, October 2000. PDF file here
  95. J. L. Trahan, A. G. Bourgeois, Y. Pan, and R. Vaidyanathan, "An Optimal and Scalable Algorithm for Permutation Routing on Reconfigurable Linear Arrays with Optically Pipelined Buses," Journal of Parallel and Distributed Computing (JPDC), Vol. 60, No. 9, Sept. 2000, pp. 1125-1136. PDF file here
  96. K. Li, Y. Pan, and M. Hamdi, "Solving graph theory problems using reconfigurable pipelined optical buses," Parallel Computing, Vol. 26, No. 6, May 2000, pp. 723-735. PDF file here
  97. Y. Pan, M. Hamdi, and K. Li, ``Euclidean Distance Transform for Binary Images on Reconfigurable Mesh-Connected Computers,'' IEEE Transactions on Systems, Man, and Cybernetic - Part B: Cybernetics, Vol. 30, No. 1, pp. 240-244, Feb. 2000. PDF file here
  98. Y. Yang, J. Wang, and Y. Pan, ``Permutation Capability of Optical Multistage Interconnection Networks,'' Journal of Parallel and Distributed Computing (JPDC), Vol. 60, No. 1, pp. 72-91, Jan. 2000. PDF file here
  99. J.S. Shang, M. Wagner, Y. Pan, and D.C. Blake, ``Strategies for adopting FVTD on multicomputers,'' IEEE Computing in Science & Engineering, (formerly known as IEEE Computational Science and Engineering), Vo. 2, No. 1, pp. 10-21, Jan./Feb. 2000. PDF file here
  100. K. Li, Y. Pan, and S.-Q. Zheng, ``Efficient Deterministic and Probabilistic Simulations of PRAMs on Linear Arrays with Reconfigurable Pipelined Bus Systems,'' The Journal of Supercomputing, vol. 15, no. 2, pp. 163-181, February 2000. PDF file here

    1999

  101. Y. Pan and K. Li, ``Constant-time algorithm for computing the Euclidean distance maps of binary images on 2D meshes with reconfigurable buses,'' Information Sciences, Vo. 120, No. 1-4, pp. 209-221, Dec. 1999.
  102. K. Li, Y. Pan, and S. Q. Zheng, ``Parallel matrix computations using a reconfigurable pipelined optical bus,'' Journal of Parallel and Distributed Computing (JPDC), vol. 59, no. 1, pp. 13-30, October 1999. PDF file here
  103. H. Shen, F. Chin, and Y. Pan, ``Efficient fault-tolerant routing in multihop optical WDM networks,'' IEEE Transactions on Parallel and Distributed Systems, Vol. 10, No. 10, pp. 1012-1025, Oct. 1999. PDF file here
  104. K. Li, Y. Pan, H. Shen, and S.-Q. Zheng, ``A study of average-case speedup and scalability of parallel computations on static networks,'' Mathematical and Computer Modelling , Vol. 29, No. 9, pp. 83-94, May 1999. PDF file here
  105. M. Hamdi, C. Qiao, Y. Pan, and J. Tong, ``Communication-efficient sorting algorithms on reconfigurable array of processors with slotted optical buses,'' Journal of Parallel and Distributed Computing (JPDC), Vol. 57, No. 2, May 1999, pp. 166-187. PDF file here
  106. Y. Pan, K. Li, and M. Hamdi, ``An improved constant time algorithm for computing the Radon and Hough transforms on a reconfigurable mesh,'' IEEE Transactions on Systems, Man, and Cybernetics - Part A: Systems and Humans , Vol. 29, No. 04, July 1999, pp. 417-421. PDF file here
  107. M. Hamdi, Y. Pan, B. Hamidzadeh, and F. M. Lim, ``Parallel Computing on an Ethernet Cluster of Workstations: Opportunities and Constraints,'' The Journal of Supercomputing, Vol. 13, No. 2, March 1999, pp. 111-132. PDF file here
  108. Y. Pan, C. Qiao, and Y. Yang, ``Optical Multistage Interconnection Networks: New Challenges and Approaches,'' IEEE Communications Magazine, Feature Topic on Optical Networks, Communication Systems and Devices, Vol. 37, No. 2, Feb. 1999, pp. 50-56. PDF file here

    1998

  109. K. Li, Y. Pan, and S. Q. Zheng, ``Fast and processor efficient parallel matrix multiplication algorithms on a linear array with a reconfigurable pipelined bus system,'' IEEE Transactions on Parallel and Distributed Systems, Vol. 9, No. 8, August 1998, pp. 705-720. PDF file here
  110. K. Li, Y. Pan, H. Shen, G. H. Young, and S. Q. Zheng, ``Lower Bounds for Dynamic Tree Embedding in Bipartite Networks,'' Journal of Parallel and Distributed Computing (JPDC), vol. 53, no. 2, pp. 119-143, September 1998. PDF file here
  111. H. Shen, K. Li, Y. Pan, G.H. Young, and S. Q. Zheng, ``Performance analysis for dynamic tree embedding in k-partite networks by random walk,'' Journal of Parallel and Distributed Computing (JPDC), Special Issue on Irregular Problems in Supercomputing Applications, vol. 50, no. 1, April 1998, pp. 144-156. PDF file here

    1997

  112. Yi Pan and Henry Y. H. Chuang, "Properties and Performance of the Block Shift Network," IEEE Transactions on Circuits and Systems - I: Fundamental Theory and Applications, Vol. 44, No. 2, February 1997, pp. 93-102. PDF file here